A gapless, unambiguous genome sequence of the enterohemorrhagic Escherichia coli O157:H7 strain EDL933

Haythem Latif; Howard J. Li; Pep Charusanti; Bernhard Palsson; Ramy K. Aziz

doi:10.1128/genomeA.00821-14

A gapless, unambiguous genome sequence of the enterohemorrhagic Escherichia coli O157:H7 strain EDL933

Haythem Latif, Howard J. Li, Pep Charusanti, Bernhard Palsson, Ramy K. Aziz

University of Iceland

University of Iceland

Research output: Contribution to journal › Article › peer-review

Abstract

Escherichia coli EDL933 is the prototypic strain for enterohemorrhagic E. coli serotype O157:H7, associated with deadly foodborne outbreaks. Because the publicly available sequence of the EDL933 genome has gaps and >6,000 ambiguous base calls, we here present an updated high-quality, unambiguous genome sequence with no assembly gaps.

Original language	English
Article number	e00821-14
Journal	Genome Announcements
Volume	2
Issue number	4
DOIs	https://doi.org/10.1128/genomeA.00821-14
Publication status	Published - 2014

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title = "A gapless, unambiguous genome sequence of the enterohemorrhagic Escherichia coli O157:H7 strain EDL933",

abstract = "Escherichia coli EDL933 is the prototypic strain for enterohemorrhagic E. coli serotype O157:H7, associated with deadly foodborne outbreaks. Because the publicly available sequence of the EDL933 genome has gaps and >6,000 ambiguous base calls, we here present an updated high-quality, unambiguous genome sequence with no assembly gaps.",

author = "Haythem Latif and Li, \{Howard J.\} and Pep Charusanti and Bernhard Palsson and Aziz, \{Ramy K.\}",

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year = "2014",

doi = "10.1128/genomeA.00821-14",

language = "English",

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journal = "Genome Announcements",

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AU - Latif, Haythem

AU - Li, Howard J.

AU - Charusanti, Pep

AU - Palsson, Bernhard

AU - Aziz, Ramy K.

PY - 2014

Y1 - 2014

N2 - Escherichia coli EDL933 is the prototypic strain for enterohemorrhagic E. coli serotype O157:H7, associated with deadly foodborne outbreaks. Because the publicly available sequence of the EDL933 genome has gaps and >6,000 ambiguous base calls, we here present an updated high-quality, unambiguous genome sequence with no assembly gaps.

AB - Escherichia coli EDL933 is the prototypic strain for enterohemorrhagic E. coli serotype O157:H7, associated with deadly foodborne outbreaks. Because the publicly available sequence of the EDL933 genome has gaps and >6,000 ambiguous base calls, we here present an updated high-quality, unambiguous genome sequence with no assembly gaps.

UR - https://www.scopus.com/pages/publications/85003604934

U2 - 10.1128/genomeA.00821-14

DO - 10.1128/genomeA.00821-14

M3 - Article

SN - 2169-8287

VL - 2

JO - Genome Announcements

JF - Genome Announcements

IS - 4

M1 - e00821-14

ER -

A gapless, unambiguous genome sequence of the enterohemorrhagic Escherichia coli O157:H7 strain EDL933

Abstract

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