Abstract
Much genomic-scale, especially transcriptomic, data on spider phylogeny has accumu-lated in the last few years. These data have recently been used to investigate the diverse architectures and the origin of spider webs, concluding that the ancestral spider spun no foraging web, that spider webs evolved de novo 10-14 times, and that the orb web evolved at least three times. These findings in fact result from a particular phylogenetic character coding strategy, specifically coding the absence of webs as logically equivalent, and homologous to, 10 other observable (i.e., not absent) web architectures. Absence" of webs should be regarded as inapplicable data. To be analyzed properly by character optimization algorithms, it should be coded as ?" because these codes-or their equivalent-are handled differently by such algorithms. Additional problems include critical misspellings of taxon names from one analysis to the next (misspellings cause some optimization algorithms to drop terminals, which affects taxon sampling and results), and mistakes in spider natural history. In sum, the method causes character optimization algorithms to produce counter-intuitive results, and does not distinguish absence from secondary loss. Proper treatment of missing entries and corrected data instead imply that foraging webs are primitive for spiders and that webs have been lost-5-7 times, not gained 10-14 times. The orb web, specifically, may be homologous (originated only once) although lost 2-6 times.
| Original language | English |
|---|---|
| Article number | e6703 |
| Journal | PeerJ |
| Volume | 2019 |
| Issue number | 4 |
| DOIs | |
| Publication status | Published - 2019 |
Bibliographical note
Funding Information: This work was supported by NSF grant EAR-0228699, DEB-1050187-1050253-1314749 and NSF IOS 1556165, as well as support from the Global Genome Initiative at the National Museum of Natural History, Smithsonian Institution, the Smithsonian Institution Barcode Network, and The Evert and Marion Schlinger Foundation. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. Funding Information: The following grant information was disclosed by the authors: NSF: EAR-0228699, DEB-1050187-1050253-1314749, NSF IOS 1556165. Global Genome Initiative at the National Museum of Natural History. Smithsonian Institution. Smithsonian Institution Barcode Network. The Evert and Marion Schlinger Foundation. Publisher Copyright: © 2019 PeerJ Inc.. All rights reserved.Other keywords
- Araneae
- Character optimization
- Homology
- Orb webs
- Phylogenomics
- Silk
- Spider
- Spider webs
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