Expa: A program for calculating extreme pathways in biochemical reaction networks

Steven L. Bell; Bernhard Palsson

doi:10.1093/bioinformatics/bti228

Expa: A program for calculating extreme pathways in biochemical reaction networks

Steven L. Bell
, Bernhard Palsson

University of Iceland

Háskóli Íslands

Rannsóknarafurð: Framlag til fræðitímarits › Grein › ritrýni

Útdráttur

Summary: The set of extreme pathways, a generating set for all possible steady-state flux maps in a biochemical reaction network, can be computed from the stoichiometric matrix, an incidence-like matrix reflecting the network topology. Here, we describe the implementation of a well-known algorithm to compute these pathways and give a summary of the features of the available software.

Upprunalegt tungumál	Enska
Síður (frá-til)	1739-1740
Síðufjöldi	2
Fræðitímarit	Bioinformatics
Bindi	21
Númer tölublaðs	8
DOI	https://doi.org/10.1093/bioinformatics/bti228
Útgáfustaða	Útgefið - 15 apr. 2005

Athugasemd

Funding Information: Financial support for this work was provided by a grant from the National Institutes of Health (GM68837). Bernhard Palsson serves on the Scientific Advisory board of Genomatica.

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10.1093/bioinformatics/bti228

Vitna í þetta

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title = "Expa: A program for calculating extreme pathways in biochemical reaction networks",

abstract = "Summary: The set of extreme pathways, a generating set for all possible steady-state flux maps in a biochemical reaction network, can be computed from the stoichiometric matrix, an incidence-like matrix reflecting the network topology. Here, we describe the implementation of a well-known algorithm to compute these pathways and give a summary of the features of the available software.",

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AB - Summary: The set of extreme pathways, a generating set for all possible steady-state flux maps in a biochemical reaction network, can be computed from the stoichiometric matrix, an incidence-like matrix reflecting the network topology. Here, we describe the implementation of a well-known algorithm to compute these pathways and give a summary of the features of the available software.

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DO - 10.1093/bioinformatics/bti228

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Expa: A program for calculating extreme pathways in biochemical reaction networks

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